BioServiceLab

Bioinformatics analysis service

From raw reads to figures you can publish.

Single-cell, bulk and epigenomic sequencing analysis, done reproducibly and explained clearly, for labs that would rather spend their time on the biology.

Discuss your project See what we analyse

01Services

Analyses we run

Common sequencing data types, from quality control to biological interpretation. Not listed? Ask us; most projects are a combination.

scRNA-seq · snRNA-seq

Single-cell transcriptomics

Quality control, integration and batch correction, clustering and cell-type annotation, differential expression, trajectories and cell–cell communication.

Seurat · Scanpy · scVI

Bulk RNA-seq

Transcriptomics

Alignment and quantification, differential expression, pathway and gene-set enrichment, co-expression and signature scoring.

STAR · salmon · DESeq2 · GSEA

ChIP · CUT&Tag · ATAC

Epigenomics

Peak calling, differential binding and accessibility, motif analysis, and integration with expression data.

MACS · DiffBind · HOMER

WGS · WES · Panels

Genomic variants

Germline and somatic variant calling, annotation and filtering, copy-number and mutational signature analysis.

GATK · Mutect2 · VEP

Figures

Publication-ready figures

Multi-panel figures formatted for your target journal, consistent styling, colour-blind-safe palettes, plus legends and methods text.

ggplot2 · matplotlib · Illustrator-ready SVG

Shiny · Web

Interactive data portals

Shiny apps and web dashboards so collaborators, reviewers and readers can explore your data, hosted for you.

Shiny · Quarto · Plotly

02Process

How a project runs

  1. 01

    Consult

    Tell us about your data and your question. We suggest an analysis plan.

  2. 02

    Scope & quote

    A clear scope, timeline and price, agreed before any work starts.

  3. 03

    Analysis

    Reproducible pipelines, with progress updates and interim results along the way.

  4. 04

    Delivery & support

    Report, figures and code, plus help with revisions and reviewer comments.

03Deliverables

What you receive

Everything needed to understand, reproduce and publish the results, organised in one folder.

your_project/

  • report.htmlAnalysis report with plain-language interpretation
  • figures/PDF, SVG and PNG, journal-ready
  • methods.docxMethods text for your manuscript
  • code/R and Python scripts that rerun every step
  • results/Processed data and result tables

Reproducible

Every number and figure traces back to versioned code that you receive with the results.

Explained

We tell you what was done, why, and what the results do and do not show.

Confidential

Your data is used only for your project and deleted when it ends, or on request.

04Contact

Tell us about your project.

Send a short email and we will get back to you with an analysis plan.

Helpful to include

  • Organism and tissue
  • Data type and sequencing platform
  • Number of samples and groups
  • The biological question
  • Your timeline